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A network-flow-based optimal sample preparation algorithm for digital microfluidic biochips
Conference paper

A network-flow-based optimal sample preparation algorithm for digital microfluidic biochips

Trung Anh Dinh, Shigeru Yamashita and Tsung-Yi Ho
Proceedings of the Asia and South Pacific Design Automation Conference, ASP-DAC, pp.225-230
2014

Abstract

Sample preparation, which is a front-end process to produce droplets of the desired target concentrations from input reagents, plays a pivotal role in every assay, laboratory, and application in biomedical engineering and life science. The consumption of sample/buffer/waste is usually used to evaluate the effectiveness of a sample preparation process. In this paper, for the first time, we present an optimal sample preparation algorithm based on a minimum-cost maximum-flow model. By using the proposed model, we can obtain both the optimal cost of sample and buffer usage and the waste amount even for multiple-target concentrations. Experiments demonstrate that we can consistently achieve much better results not only in the consumption of sample and buffer but also the waste amount when compared with all the state-of-the-art of the previous approaches. © 2014 IEEE.

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