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Space-efficient construction algorithm for the circular suffix tree
Conference paper   Peer reviewed

Space-efficient construction algorithm for the circular suffix tree

Wing-Kai Hon, Tsung-Han Ku, Rahul Shah and Sharma V. Thankachan
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol.7922 LNCS, pp.142-152
2013

Abstract

Hon et al. (2011) proposed a variant of the suffix tree, called circular suffix tree, and showed that it can be stored succinctly and can be used to solve the circular dictionary matching problem efficiently. In this paper, we give the first construction algorithm for the circular suffix tree, which takes O(nlogn) time and requires O(n log σ + d log n) bits of working space, where n is the total length of the patterns in D, d is the number of patterns in D, and σ is the alphabet size. © 2013 Springer-Verlag.

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