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Using Deep Learning to Identify Cell and Particle in Live-Cell Time-lapse Images
Conference paper

Using Deep Learning to Identify Cell and Particle in Live-Cell Time-lapse Images

Hui-Jun Cheng, Chun-Yuan Lin, Cheng-Xian Wu, Che-Lun Hung, Wei-Hsiang Chen and Chuan-Yi Tang
Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018, pp.1327-1331
01/2019

Abstract

CNN Deep Learning live-cell time-lapse image particle and cell identification real-time object identification Biomedical Engineering Health Informatics
Live-cell time-lapse images generated by biological experiments are useful for observing activities, even for proposing novel hypotheses. In past work, we had proposed a particle-cell relation mining method, abbreviate to PCRM, which involved identifying particles and cells as objects from live-cell time-lapse images at first. Then PCRM is used to track the pathways of particles to calculate the measures as distances between the particles and cells. Finally, the relationship of particles and cells can be quantified by PCRM. The PCRM is useful for biologists to prove their hypotheses. However,it is very time-consuming when identifying the objects among a large number of biological images. Hence, in this paper, we propose a method using deep learning technology, abbreviated to PCOD, to accelerate the particle and cell identification. The PCOD method achieves the accuracies of 90.2% and 99.9% for particles and cells identification, respectively. In this way, the overall particles and cells can be identified in real time.

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