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Improved Algorithms for the Text Fingerprinting Problem
Dissertation

Improved Algorithms for the Text Fingerprinting Problem

Chan, Chi-Yuan
Doctor of Philosophy (PHD), 國立清華大學, 資訊工程學系
2009

Abstract

演算法 字串比對 特徵化 文字索引 algorithms string matching fingerprinting text indexing
In this dissertation, we study the text fingerprinting indexing problem, which was introduced by Amir et al. Let S be a string over a finite, ordered alphabet \Sigma. For any substring S' of S, the set of distinct characters contained in S' is called its fingerprint. The text fingerprinting indexing problem consists of constructing a data structure for the string S in advance, so that on given any input set C \subseteq \Sigma of characters, we can answer the following queries efficiently: (1) determine if C represents a fingerprint of some substrings in S; (2) find all maximal substrings of S whose fingerprint is equal to C. The best results known so far solved these two queries in □(|\Sigma|) and □(|\Sigma| + K) time, respectively, where K is the number of maximal substrings. In this dissertation, we propose two improved algorithms for the text fingerprinting indexing problem. The first algorithm solves the two queries in O(min{|C| log n, |\Sigma|}) and O(min{|C| log n, |\Sigma|} + K) time, respectively. The second algorithm solves them in O(|C| log (|\Sigma|/|C|)) and O(|C| log (|\Sigma|/|C|) + K) time, respectively, by using a new data structure with less storage than the existing solutions. Both results answer an open problem proposed by Amir et al.

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