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Columba 2.0: A Co-Layout Synthesis Tool for Continuous-Flow Microfluidic Biochips
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Columba 2.0: A Co-Layout Synthesis Tool for Continuous-Flow Microfluidic Biochips

Tsun-Ming Tseng, Mengchu Li, Daniel Nestor Freitas, Travis McAuley, Bing Li, Tsung-Yi Ho, Ismail Emre AraciUlf Schlichtmann
IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems, 卷.37(8), 頁碼.1588-1601
08/2018

摘要

Continuous-flow microfluidic large-scale integration (mLSI) microfluidics mixed integer linear programming physical design Software Computer Graphics and Computer-Aided Design Electrical and Electronic Engineering
Continuous-flow microfluidic large-scale integration (mLSI) shows increasing importance in biological/chemical fields, thanks to its advantages in miniaturization and high throughput. Current mLSI is designed manually, which is time-consuming and error-prone. In recent years, design automation research for mLSI has evolved rapidly, aiming to replace manual labor by computers. However, previous design automation approaches used to design each microfluidic layer separately and over-simplify the layer interactions to various degrees, which resulted in a gap between realistic requirements and automatically generated designs. In this paper, we propose a module model library to accurately model microfluidic components involving layer interactions; and we propose a co-layout synthesis tool, Columba, which generates AutoCAD-compatible designs that fulfill all designs rules and can be directly used for mask fabrication. Columba takes plain-text netlist descriptions as inputs, and performs simultaneous placement and routing for multiple layers while ensuring the planarity of each layer. We validate Columba by fabricating two of its output designs. Columba is the first design automation tool that can seamlessly synchronize with the manufacturing flow.

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