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Faster query algorithms for the text fingerprinting problem
Journal article   Peer reviewed

Faster query algorithms for the text fingerprinting problem

Chi-Yuan Chan, Hung-I Yu, Wing-Kai Hon and Biing-Feng Wang
Information and Computation, Vol.209(7), pp.1057-1069
07/2011

Abstract

Combinatorial algorithms on words Fingerprints Patricia trie Text indexing
Let S be a string over a finite, ordered alphabet Σ. For any substring S′ of S, the set of distinct characters contained in S′ is called its fingerprint. The text fingerprinting indexing problem is to construct a data structure for the string S in advance, so that on given any input subset C of Σ, we can answer the following queries efficiently: (1) determine if C represents a fingerprint of some substrings in S; (2) find all maximal substrings of S whose fingerprint is C. The best known results solved these two queries in Θ(|Σ|) and Θ(|Σ|+K) time, respectively, where K is the number of maximal substrings. In this paper, we propose two improved algorithms for the text fingerprinting indexing problem. The first one solves the two queries in O(|C|logn) and O(|C|logn+K) time, respectively. For the second one, the query time complexities are further reduced to O(|C|log(|Σ|/|C|)) and O(|C|log(|Σ|/|C|)+K). Both results answer an open problem proposed by Amir et al. © 2011 Elsevier Inc. All rights reserved.

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