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Revealing the Solution Conformation and Hydration Structure of Type I Tropocollagen Using X-ray Scattering and Molecular Dynamics Simulation
Journal article   Open access   Peer reviewed

Revealing the Solution Conformation and Hydration Structure of Type I Tropocollagen Using X-ray Scattering and Molecular Dynamics Simulation

Ying-Jen Shiu, Bradley W Mansel, Kuei-Fen Liao, Ting-Wei Hsu, Je-Wei Chang, Orion Shih, Yi-Qi Yeh, Johannes Allwang and U-Ser Jeng
Biomacromolecules, Vol.26(1), pp.449-458
13/01/2025
PMID: 39746152

Abstract

Hydrogen Bonding Molecular Dynamics Simulation Protein Conformation Scattering, Small Angle Solutions Tropocollagen - chemistry Water - chemistry X-Ray Diffraction
Hydration plays a crucial role in regulating the dispersion behavior of biomolecules in water, particularly in how pH-sensitive hydration water network forms around proteins. This study explores the conformation and hydration structure of Type-I tropocollagen using small- and wide-angle X-ray scattering (SWAXS) and molecular dynamics (MD) simulations. The results reveal that tropocollagen exhibits a significant softening conformation in solution, transitioning from its rod-like structure in tissues to a worm-like conformation, characterized by a reduced radius of gyration of 50 nm and a persistent length of 34 nm. The SWAXS-supported MD calculations further establish a hydration water network characterized by a 2.8 Å free-water exclusion zone where water molecules are largely hydrogen-bonded to the densely distributed polar groups on the tropocollagen surfaces. These first-layer water molecules are bridged by outer water molecules extending up to 4 Å from the protein surfaces, forming a major hydration shell that encapsulates the protein.
url
https://doi.org/10.1021/acs.biomac.4c01261View
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