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Simultaneous supervised clustering and feature selection over a graph
Journal article

Simultaneous supervised clustering and feature selection over a graph

Xiaotong Shen, Hsin-Cheng Huang and Wei Pan
Biometrika, Vol.99(4), pp.899-914
12/2012

Abstract

Expression quantitative trait loci data High-dimensional data Nonconvex minimization Prediction Statistics and Probability,Mathematics (all),Agricultural and Biological Sciences (miscellaneous),Agricultural and Biological Sciences (all),Statistics Probability and Uncertainty,Applied Mathematics
In this article, we propose a regression method for simultaneous supervised clustering and feature selection over a given undirected graph, where homogeneous groups or clusters are estimated as well as informative predictors, with each predictor corresponding to one node in the graph and a connecting path indicating a priori possible grouping among the corresponding predictors. The method seeks a parsimonious model with high predictive power through identifying and collapsing homogeneous groups of regression coefficients. To address computational challenges, we present an efficient algorithm integrating the augmented Lagrange multipliers, coordinate descent and difference convex methods. We prove that the proposed method not only identifies the true homogeneous groups and informative features consistently but also leads to accurate parameter estimation. A gene network dataset is analysed to demonstrate that the method can make a difference by exploring dependency structures among the genes. © 2012 Biometrika Trust.

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